Institute for Systems Biology

Comparison of the transcriptome, lipidome, and c-di-GMP production between BCGΔBCG1419c and BCG, with Mincle- and Myd88-dependent induction of proinflammatory cytokines in murine macrophages (2024) Flores-Valdez MA, Peterson EJ, Aceves-Sánchez MdJ, Baliga NS, Morita YS, Sparks IL, Saini DK, et al. Journal article Early IFN-α signatures and persistent dysfunction are distinguishing features of NK cells in severe COVID-19 (2021) Kraemer B, Knoll R, Bonaguro L, Tovinh M, Raabe J, Astaburuaga-Garcia R, Schulte-Schrepping J, et al. Journal article The Immune Landscape of Cancer. (2019) Thorsson V, Gibbs DL, Brown SD, Wolf D, Bortone DS, Yang THO, Porta-Pardo E, et al. Journal article, Erratum Transcriptome and histone epigenome of Plasmodium vivax salivary-gland sporozoites point to tight regulatory control and mechanisms for liver-stage differentiation in relapsing malaria (2019) Muller I, Jex AR, Kappe SH, Mikolajczak SA, Sattabongkot J, Patrapuvich R, Lindner S, et al. Journal article Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas. (2018) Knijnenburg TA, Wang L, Zimmermann MT, Chambwe N, Gao GF, Cherniack AD, Fan H, et al. Journal article Spatial Organization and Molecular Correlation of Tumor-Infiltrating Lymphocytes Using Deep Learning on Pathology Images. (2018) Saltz J, Gupta R, Hou L, Kurc T, Singh P, Vu Nguyen , Samaras D, et al. Journal article Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics. (2018) Ding L, Bailey MH, Porta-Pardo E, Thorsson V, Colaprico A, Bertrand D, Gibbs DL, et al. Journal article The Immune Landscape of Cancer. (2018) Thorsson V, Gibbs DL, Brown SD, Wolf D, Bortone DS, Yang THO, Porta-Pardo E, et al. Journal article Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer. (2018) Hoadley KA, Yau C, Hinoue T, Wolf DM, Lazar AJ, Drill E, Shen R, et al. Journal article Oncogenic Signaling Pathways in The Cancer Genome Atlas. (2018) Sanchez-Vega F, Mina M, Armenia J, Chatila WK, Luna A, La KC, Dimitriadoy S, et al. Journal article